HTML / CSS Interfering with raycaster... I guess

Can you please try to compute your mouse coordinates like suggested here:

Does it make any difference?

Besides, keep in in that passing true to Raycaster.intersectObjects() means the given array is recursively tested for intersections. If the visual elements of your coordinate system is composed of a hierarchy of objects, you definitely want to pass true to this method. Otherwise you might detect no intersections at all.

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